Neurogenic bladder (NB) has complex and diverse etiologies, with a wide range of impacts. Although there are numerous existing treatment methods, their effects vary, and they are subject to many limitations. Repetitive transcranial magnetic stimulation (rTMS), as a non-invasive neuromodulation technique, has demonstrated potential in the treatment of NB in recent years. However, the treatment protocol has not yet been unified, and a standard consensus is lacking. This review summarizes the application of rTMS in NB, discussing the selection of rTMS parameters and the combined treatment approaches with rTMS for NB. We found that the intervention timing and duration of rTMS treatment for NB remain unclear, but there has been some progress regarding its therapeutic time-effectiveness. Finally, it is concluded that further verification of the mechanisms, determination of treatment protocols, and expansion of research scale are required for rTMS in the treatment of NB at present. This review aims to provide new clinical ideas for the treatment of NB, with the expectation of exploring more efficient therapeutic methods.